其他
R kernel in Jupyter notebook 3
I followed the post, , to install jupyter with python3 and R kernels in my iMac. I have on my Macbook Pro and also want to have jupyter on it. The installation process is quite similar.
Install Jupyter
sudo apt-get install python3-pip
sudo pip3 install jupyterThen we can use the following command to start jupyter:
ipython notebookInstall IRkernel
To compile IRkernel, we should firstly have zmq lib installed.
sudo apt-get install libzmq3-dev python-zmqIn R, run the following command to install :
install.packages(c('rzmq','repr','IRkernel','IRdisplay'),
repos = c('http://irkernel.github.io/',
getOption('repos')),
type = 'source')
IRkernel::installspec()Now we can use R in jupyter. Inline image is a great feature especially for demonstration.
With available in R and my package , R in jupyter can be a great environment for phylogenetics.